function PAR=PARabalone3a % % define model parameters and values % some parameters are independent of space, others are arrays PAR.case = '3a'; PAR.Nx = 3; % number of cross shore grid boxes (columns) PAR.Ny = 4; % number of along shore grid boxes (rows) Nx=PAR.Nx;Ny=PAR.Ny; PAR.depth = ones(Ny,Nx); % vertical dimension of the volume (m) % infection rate by contact with infections particles % [infected produced/infectious particle/day] PAR.IPinfect = 0.025*ones(Ny,Nx); %PAR.IPinfect = zeros(Ny,Nx); % infection rate by contact with infectious individuals % [infected produced/susceptible animal/day] PAR.Iinfect = zeros(Ny,Nx); %PAR.Iinfect = 0.02*ones(Ny,Nx); % infection rate by contact with dead infectious individuals % [infected produced/susceptible animal/day] PAR.Dinfect = zeros(Ny,Nx); %PAR.Dinfect = 0.0008*ones(Ny,Nx); % mortality rate of infected [1/day] PAR.Imort = 8.d-2*ones(Ny,Nx); % background mortality for susceptable [1/day] PAR.Bmort = zeros(Ny,Nx); % removal rate of dead [1/day] PAR.DeadDecay = 1.5*ones(Ny,Nx); % infectious particles released by infected [particles/animal/day] PAR.Irelease = .015*ones(Ny,Nx); % infectious particles released by dead [particles/animal/day] PAR.Drelease = ones(Ny,Nx); % removal rate of IP from the environment [1/day] PAR.IPremove = 0.001*ones(Ny,Nx); % rate of transfer of IP in the E/W direction [1/day] %PAR.Uex = 0.05*ones(Ny,Nx-1); PAR.Uex = [0.05 0.05 ; 0 0; 0 0; -0.05 -0.05 ]; % rate of transfer of IP in the N/S direction [1/day] %PAR.Vex = 0.2*ones(Ny-1,Nx); PAR.Vex = [-0.1 0 0.1; -0.1 0 0.1; -0.1 0 0.1];