Publications for John M. Klinck
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Old Dominion University
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Center for Coastal Physical Oceanography
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Department of Ocean Earth and Atmospheric Sciences
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Updated October 1, 2004

<p>
Hickey, B.M., J.M. Klinck, M.S. Dinniman and S.E. Allen, 2004.
Numerical simulation of circulation near Astoria Canyon.
ms in preparation.

<p>
Hofmann, E.E., J.M. Klinck, E.N. Powell, S.E. Ford, S. Jordan, E. Burreson, 2004. 
Modeling studies of climate variability and disease interactions in eastern
oyster populations.
manuscript in preparation.

<p>
Hyun, K.H. and J.M. Klinck, 2004.
The effect of stratification on submarine canyon dynamics forced by
upwelling winds. 
manuscript in preparation.

<p>
Haskell, A.G.E. Haskell, E.E. Hofmann and J.M. Klinck, 2004.
EOF techniques integrated in marine ecosystem models.
J. Marine Res., resubmitted.

<p>
Hyun, K.H. and J.M. Klinck, 2004. 
The effect of submarine canyon width on flow characteristics and across shelf
transport forced by upwelling winds.
<a http://www.agu.org/journals/jc/> J. Geophys. Res.</a>, submitted.

<p>
Dinniman, M.S., J.M. Klinck, and W.O. Smith, Jr., 2004.
A model study of circulation and cross shelf exchange on the west Antarctic
Peninsula continental shelf.
Deep-Sea Res. II, in press.

<p>
Klinck, J.M., E.E. Hofmann, R.C. Beardsley, B. Salihoglu and S. Howard, 2004.
Water mass properties and circulation on the west Antarctic Peninsula
continental shelf in austral fall and winter 2001.
Deep-Sea Res. II, in press.

<p>
Hofmann, E.E., A.G. Edward Haskell, J.M. Klinck and C.M. Lascara, 2004.
Lagrangian modeling studies of Antarctic Krill (Euphausia superba) swarm
formation. 
ICES J. Mar. Sci., 61, 617-631. DOI:10.1016/j.icesjms.2004.03.028.
<a href="Publications/KrillHofmannICES04.pdf"> [Full text (PDF)] </a>

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Hofmann, E.E., E.N. Powell, E.A. Bochenek and J.M. Klinck, 2004.
A modelling study of the influence of environment and food supply on
survival of {\it Crassostrea gigas} larvae.
ICES J. Mar. Sci., 61, 596-616. DOI:10.1016/j.icesjms.2004.03.029.
<a href="Publications/GigasLarvHofmannICES04.pdf"> [Full text (PDF)] </a>

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Prezelin, B.B., E.E. Hofmann, M. Moline and J.M. Klinck, 2004.
Recognizing Physical Forcing of Phytoplankton Community Structure and
Primary Production in Continental Shelf Waters of the Western Antarctic
Peninsula: Synthesis and Analyses of Five Seasonal Cruises.
J. Marine Res., 62, 419-460.

<p>
Allen, S.E., M.S. Dinniman, J.M. Klinck, D.D. Gorby, A.J. Hewett and B.M. Hickey, 2003.
On vertical advection truncation errors in terrain following numerical
models: Comparison to a laboratory model for upwelling over submarine canyons. 
<a href=http://www.agu.org/journals/jc/>J. Geophys. Res.</a>, 108(C1), 3-1--3-16. DOI: 10.1029/2001JC000978.
<a href="Publications/Allen.jgr2003.pdf"> [Full text (PDF)] </a>

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Dinniman, M.S., J.M. Klinck, and W.O. Smith, Jr., 2003.
Cross shelf exchange in a model of the Ross Sea circulation and biogeochemistry.
Deep-Sea Res. II, 50, 3103-3120.
<a href="Publications/RossCircDinnimanDSR03.pdf"> [Full text (PDF)] </a>

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Smith, W.O., Jr., M.S. Dinniman, J.M. Klinck, and E.E. Hofmann, 2003.
Biogeochemical climatologies in the Ross Sea, Antarctica: 
seasonal patterns of nutrients and biomass.
Deep-Sea Res. II, 50, 3083-3101.
<a href="Publications/RossNutsSmithDSR03.pdf"> [Full text (PDF)] </a>

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Hofmann, E.E., J.M. Klinck, D.P. Costa, K.L. Daly, J.J. Torres and
W.R. Fraser, 2002.
U.S. Southern Ocean Global Ocean Ecosystem Dynamics Program.
Oceanography, 15, 64-74.
<a href="Publications/SoglobecHofmannOcean02.pdf"> [Full text (PDF)] </a>

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Smith, D.A. and J.M. Klinck, 2002.
Water properties on the west Antarctic Penisula continental shelf:
A model study of effect of surface fluxes and sea-ice.
Deep-Sea Res. II, 49, 4863-4886.
<a href="Publications/SeaIceSmithDSR02.pdf"> [Full text (PDF)] </a>

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Dinniman, M.S. and J.M. Klinck, 2002.
The influence of open versus periodic alongshore boundaries on circulation
near submarine canyons.
J. Atmos. Ocean. Tech.,  19, 1722-1737.

<p>
Powell, E.N., E.A. Bochenek, J.M. Klinck, E.E. Hofmann, 2002.
Influence of food quality and quantity on the growth and development of
Crassostrea gigas larvae: a modeling study, 
Aquaculture,  210, 89-117. 
<a href="Publications/GigasLarvaePowellAqua02.pdf"> [Full text (PDF)] </a>     

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Klinck, J.M., E.E. Hofmann, E.N. Powell and M.M. Dekshenieks, 2002. 
Impact of channelization on oyster production: a hydrodynamic--oyster
population model for Galveston Bay, Texas.
Environmental Modeling and Assessment, 7, 273-289. 

<p>
Powell, E.N., J.M. Klinck, E.E. Hofmann, and M.A. McManus, 2002.
The influence of water allocation and freshwater inflow on oyster
population: a hydrodynamic--oyster population model for Galveston Bay, Texas.
Environmental Management, 31(1), 100-121.
DOI: 10.1007/s00267-002-2695-6.

<p>
Hyun, K.-H., I.-C. Pang, J.M. Klinck, K.-S. Choi, J.-B. Lee,
E.N. Powell, E.E. Hofmann and E.A. Bochenek, 2001. 
The Effect of Food Composition on Pacific oyster Crassostrea gigas
(Thunberg) Growth in Korea: A Modeling Study. 
Aquaculture, 199, 41-62.
<a href="Publications/GigasFoodHyunAqua01.pdf"> [Full text (PDF)] </a>

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Klinck, J. and W. D. Nowlin, Jr., 2001.
Antarctic Circumpolar Current, in the Encyclopedia of Ocean Sciences, 
Academic Press., J. Steele, S. Thorpe, K. Turekian, eds., 151-159.
<a href="Publications/AccKlinckEncyOS01.pdf"> [Full text (PDF)] </a>

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Bocheneck, E.A., J.M. Klinck, E.N. Powell and E.E. Hofmann, 2001.
A biochemically based model of the growth and development of Crassotrea 
gigas larvae.
J. Shellfish Res., 20, 243-266.

<p>
Hofmann, E.E., S.E. Ford, E.N. Powell, and J.M. Klinck, 2001.
Modeling studies of the effect of climate variability on MSX disease in
Eastern Oyster (Crassostrea virginica).
Hydrobiologia, 460, 195-212.

<p>
Klinck, J.M., E.N. Powell, J.N. Kraeuter, S.E. Ford and K.A. Ashton-Alcox, 2001. 
A fisheries model for managing the oyster fishery during times of disease.
J. Shellfish Res., 20, 977-989.  

<p>
Gustaf-Adolf Paffenhofer and others, 2001.
Future marine zooplankton research--a perspective.
Mar. Ecol. Progress Series, 222, 297-308.

<p>
Klinck, J. and W. D. Nowlin, Jr., 2001.
Antarctic Circumpolar Current, in Encyclopedia of Ocean Sciences, 
Academic Press., J. Steele, S. Thorpe, K. Turekian, eds., p. 151-159.

<p>
Prezelin, B.B., E.E. Hofmann, C. Mengelt and J.M. Klinck, 2000.
The linkage between upper circumpolar deep water (UCDW) and phytoplankton
assemblages on the west Antarctic Peninsula continenal shelf.
J. Mar. Res. 58, 165-202.

<p>
Dekshenieks, M.M., E.E. Hofmann, J.M. Klinck and E.N. Powell, 2000. 
Quantifying the Effects of Environmental Variability on an Oyster Population
Using a Coupled Oyster-Circulation Model.
Estuaries, 23, 593-610. 

<p>
She, J. and J.M. Klinck, 2000.
Flow near submarine canyon driven by constant upwelling winds.
J. Geophys. Res., 105, 28,671-28,694   
<a href="Publications/SubCanSheJGR00.pdf"> [Full text (PDF)] </a>

<p>
Smith, D.A., E.E. Hofmann, J.M. Klinck and C.M. Lascara, 1999. 
Hydrography and circulation of the West Antarctic Peninsula
continental shelf. 
Deep-Sea Res., 46, 925-949.
<a href="Publications/WapCircSmithDSR99.pdf"> [Full text (PDF)] </a>

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Ford, S.E., E.N. Powell, J.M. Klinck and E.E. Hofmann, 1999.
Modeling the MSX parasite in eastern oyster, (Crassostrea virginica)
populations. I. Model development, implementation and verification.
J. Shellfish Res., 18, 475-500.

<p>
Paraso, M.C., S.E. Ford, E.N. Powell, E.E. Hofmann and J.M. Klinck, 1999.
Modeling the MSX parasite in eastern oyster (Crassostrea virginica)
Populations. II. Salinity Effects.
J. Shellfish Res., 18, 501-516.

<p>
Powell, E.N., J.M. Klinck, S.E. Ford, E.E. Hofmann and
S.J. Jordan, 1999. Modeling the MSX parasite in eastern oysters (Crassostrea
virginica) populations. III. Regional application and the problem of
transmission. 
J. Shellfish Res., 18, 517-537.

<p>
Klinck, J.M, 1998. 
Heat and salt changes on the continental shelf west of the Antarctic
Peninsula between January 1993 and January 1994,
J. Geophys. Res., 103, 7617-7636.
<a href="Publications/WapHeatKlinckJGR98.pdf"> [Full text (PDF)] </a>

<p>
Cook, T., M. Folli, J. Klinck, S. Ford and J. Miller, 1998.
The relationship between increasing sea-surface temperature and the
northward spread of  Perkinsus marinus (DERMO) disease epizootics in
oysters. 
Est. Coast. and Shelf Sci., 46, 587-597.
<a href="Publications/DermoTempCookECSS98.pdf"> [Full text (PDF)] </a>     

<p>
Spitz, Y., and J.M. Klinck, 1998.
Estimate of bottom and surface stress during a spring-neap tide cycle by
dynamical assimilation of the tide gauge observations in the Chesapeake Bay.
J. Geophys. Res., 103, 12,761-12,782.
<a href="Publications/ChesTidesSpitzJGR98.pdf"> [Full text (PDF)] </a>  

<p>
Hofmann, E.E., J.M. Klinck, R.A. Locarnini, B. Fach and E. Murphy, 1998.
Krill transport in the Scotia Sea and environs.
Antarctic Science, 10, 406-415.

<p>
Soniat, T.M., E.N. Powell, E.E. Hofmann, and J.M. Klinck, 1998. 
Understanding the success and failure of oyster populations:
the importance of sampled variables and sample timing.
J. Shellfish Res., 17, 1149-1165.

<p>
Hofmann, E.E. and J.M. Klinck, 1998. 
Hydrography and circulation of the Antarctic continental shelf: 150\degree E
to the Greenwich Meridian,
in The Sea, The Global Coastal Ocean, Regional Studies and Synthesis,
Volume 11, A.R. Robinson and K.H. Brink, eds., p. 997-1042.

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Hofmann, E.E. and J.M. Klinck, 1998. 
Thermohaline variability of the waters overlying west
Antarctic Peninsula continental shelf.  
in Ocean, Ice and Atmosphere: Interactions at the  Antarctic Continental
Margin, 
AGU Antarctic Research 
Series, Volume 75, S. Jacobs and R. Weiss, eds., p. 67-81.

<p>
Kobayashi, M., E.E. Hofmann, E.N. Powell, J.M. Klinck and K. Kusaka, 1997. 
A population dynamics model for the Japanese oyster, Crassostrea gigas.
Aquaculture, 149, 285-321.
<a href="Publications/GigasModelKobayashiAqua97.pdf"> [Full text (PDF)] </a>   

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Dekshenieks, M.M., E.E. Hofmann, J.M. Klinck and E.N. Powell, 1997. 
A modeling study of the effects of size- and depth-dependent predation on
larval survival.
J. Plankton Res., 19, 1583-1598.

<p>
Powell, E.N., J.M. Klinck, E.E. Hofmann and S. Ford, 1997.
Varying the timing of oysters transplant: Implications for management from 
simulation studies.
Fisheries Oceanography, 6:4, 213-237.

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Klinck, J.M, 1996. 
Circulation near submarine canyons: a modelling study.  
J. Geophys. Res., 101, 1211-1223.
<a href="Publications/SubCanKlinckJGR96.pdf"> [Full text (PDF)] </a>

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Powell, E.N., E.E. Hofmann, and J.M. Klinck, 1996. 
Modeling diseased oyster populations II. triggering mechanisms for 
Perkinsus marinus epizootics, 
J. Shell. Res., 15, 141-165.  

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Dekshenieks, M.M., E.E. Hofmann, J.M. Klinck and E.N. Powell, 1996. 
Modeling the vertical distribution of oyster larvae in response to
environmental conditions. 
Mar. Ecol. Prog. Series, 136, 97-110. 

<p>
Valle-Levinson, A., J.M. Klinck, G.H. Wheless, 1996. 
Inflows/outflows at the transistion between a coastal plain estuary and the
coastal ocean. 
Cont. Shelf Res., 16, 1819-1847.
<a href="Publications/PlumeValleCSR96.pdf"> [Full text (PDF)] </a>             

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Hofmann, E.E., J.M. Klinck, C.M. Lascara and D.A. Smith, 1996.
Water mass distribution and circulation west of the Antarctic Peninsula and
including Bransfield Strait, in Foundations for Ecological Research West of the
Antarctic Peninsula, R.M. Ross, E.E. Hofmann and L.B. Quetin, eds., 
AGU Antarctic Research Series, Volume 70, p. 61-80.

<p>
Wheless, G.H. and J.M. Klinck, 1995. 
On density driven circulation over sloping bottom topography. 
J. Phys. Oceanogr., 25, 888-901. 

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Klinck, J.M, 1995. 
Thermohaline structure of an eddy resolving North Atlantic model: the
influence of boundary conditions.  
J. Phys. Oceanogr., 26, 1174-1195.

<p>
Powell, E.N., E.E. Hofmann, J.M. Klinck, E.A. Wilson-Ormond and M.S. Ellis, 1995. 
Modeling Oyster Populations V. Declining Phytoplankton Stocks and the
Population Dynamics of American Oyster (Crassostrea virginicia)
Populations, 
Fisheries Research, 24, 199-222. 
<a href="Publications/Oyster5PowellFishRes95.pdf"> [Full text (PDF)] </a>     

<p>
McClean, J.L. and J.M. Klinck, 1995. 
Description and dynamics of 50-day oscillations in the western tropical
region of the CME model.   
J. Phys. Oceanogr., 25(Part 1), 2498-2517.

<p>
Smith, R.C., K.S. Baker, W.R. Fraser, E.E. Hofmann, D.M. Karl,
J.M. Klinck, L.B. Quetin, B.B. Prezelin, R.M. Ross, W.Z. Trivelpiece and
M. Vernet, 1995.  
The Palmer LTER: A long-term ecological research program at Palmer Station, Antarctica.
Oceanography, 8, 77-86.

<p>
Hofmann, E.E., E.N. Powell, J.M. Klinck and G. Saunders, 1995.
Modeling diseased oyster populations I. modeling  Perkinsus marinus
infections in oysters, 
J. Shell. Res., 14, 121-151.  

<p>
Hofmann, E.E., J.M. Klinck, E.N. Powell, S. Boyles and M. Ellis, 1994. 
Modeling oyster populations. II. Adult size and reproductive effort, 
J. Shell. Res., 13, 165-182. 

<p>
Powell, E.N., J.M. Klinck, E.E. Hofmann and S.M. Ray, 1994. 
Modeling oyster populations. IV. Rates of mortality, population crashes and management.  
Fish. Bull., 92, 347-373. 

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Klinck, J.M. and D.A. Smith, 1993. 
The effect of wind changes during the Last Glacial Maximum on the
circulation in the Southern Ocean.  
Paleoceanography, 8, 427-433.

<p>
Klinck, J.M, 1992. 
The effects of wind, density and bathymetry on a one-layer, Southern Ocean model. 
J. Geophys. Res., 97, 20,179-20,189.

<p>
Powell, E.N., E.E. Hofmann, J.M. Klinck and S.M. Ray, 1992. 
Modeling oyster populations. I. A commentary on filtration rate. Is faster always better?, 
J. Shell. Res., 11, 387-398.

<p>
Hofmann, E.E., E.N. Powell, J.M. Klinck and E.A. Wilson, 1992. 
Modeling oyster populations. III. Critical feeding periods, growth and reproduction.  
J. Shell. Res., 11, 399-416. 

<p>
Klinck, J.M., E.N. Powell, E.E. Hofmann, E.A. Wilson, S.M. Ray, 1992.
Modeling oyster populations: the effect of density and food supply on
production.  in Eight Annual Proceedings of Advanced Marine Technology
Conference, p. 85-105.

<p>
Klinck, J.M, 1991.  
Vorticity dynamics of seasonal variations of the Antarctic Circumpolar
Current from a modelling study. 
J. Phys. Oceanogr.,  21, 1514-1533.

<p>
Timm, U., J.M. Klinck and A. Okubo, 1991. 
Self- and mutual shading and competition effect on competing algal
distributions: Biological implications of the model.  
Ecological Modelling, 59, 11-36.

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Klinck, J.M, 1989. 
Geostrophic adjustment over submarine canyons.
J. Geophys. Res., 94, 6133-6144.

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Klinck, J.M, 1988. 
The influence of a narrow, transverse canyon on initially geostrophic flow.
J. Geophys. Res., 93, 509-515.

<p>
Klinck, J.M. and E.E. Hofmann, 1986. 
Deep flow variability in central Drake Passage.
J. Phys. Oceanogr., 16, 1281-1292.

<p>
Nowlin, W.D., Jr. and J.M. Klinck, 1986. 
The Physics of the Antarctic Circumpolar Current.
Rev. Geophys., 24, 469-491.

<p>
Klinck, J.M., 1986. 
Channel dynamics and its application to the Antarctic Circumpolar Current. 
in Advanced Physical Oceanographic Numerical Modelling,  J.J. O'Brien, Ed.
D. Reidel Pub., p. 299-328.

<p>
Klinck, J.M, 1985. 
EOF analysis of central Drake Passage currents from DRAKE 79.
J. Phys. Oceanogr.,  15, 288-298.

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Klinck, J.M., B. Cushman-Roisin, J.J. O'Brien, 1983.
Considerations of coastally forced flow in a branched fjord.   
in Coastal Oceanography, H. Gade, A. Edwards and H. Svendsen, Eds. 
Plenum Publishing, p. 451-474.

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Klinck, J.M., L.J. Pietrafesa, G.S. Janowitz, 1981. 
Continental Shelf Circulation Induced by a Moving, Localized Wind Stress.   
J. Phys. Oceanogr., 11, 836-848.

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Klinck, J.M., J.J. O'Brien, H. Svendsen, 1981. 
Coastal wind effects on fjord circulation. in The Norwegian Coastal
Current. R. Saetre and M. Mork, Eds. Proceedings of ``Symposium on the
Norwegian Coastal Current'', 
Geilo, Norway, 6-11 June, 1982, p. 178-214.

<p>
Klinck, J.M., J.J. O'Brien, H. Svendsen, 1981. 
A Simple Model of Fjord and Coastal Circulation Interaction.  
J. Phys. Oceanogr., 11, 1612-1626.

<p>
Hofmann, E.E., L.J. Pietrafesa, L.P. Atkinson, J.M. Klinck, 1980. 
A Time Dependent Model of Nutrient Distributions in Continental Shelf
Waters.  
Ecological Modelling, 10, 193-214.

<p>
Hofmann, E.E., J.M. Klinck, G.A. Paffenhofer, 1980. 
Concentration and Vertical Fluxes of Fecal Pellets on a Continental Shelf.
Marine Biology, 61, 327-335.